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Researchers from Heinrich Heine University Düsseldorf (HHU) have – in collaboration with colleagues from Ludwig Maximilian University (LMU) in Munich – analysed the complex biochemical processes by means of which bacteria insert proteins into their cell membranes. In the scientific journal of the European Molecular Biology Organization (The EMBO Journal), they explain that – contrary to prior assumptions – there are more similarities between the processes in bacteria and higher cells than previously thought.
The cell membrane contains a large number of proteins, which perform a wide variety of functions. Some serve as transport channels, specifically guiding substances into the cell or carrying cellular products out of it. Others are receptors, which detect control signals and then trigger processes in the cell. These proteins are folded in complex three-dimensional structures, with the specific form essential for the protein function.
One question remains unanswered in many cases for researchers: How do the proteins manufactured by the ribosomes – the “factories” of the cells – in the cell interior reach their position within the membrane in the correct form and when did the processes become established over the course of evolution? Professor Dr Alexej Kedrov, leader of the Synthetic Membrane Systems group at HHU: “The environment inside the cell is very different to that of the membrane. In the aqueous environment in the cell interior, the hydrophobic proteins would aggregate with other molecules before they could reach their target site. Special insertion mechanisms are therefore necessary.”
The nascent proteins are transported from the ribosomes to the membrane. In the next step, they are embedded in the membrane by special enzymes called “insertases”, which include the so-called Sec translocon and helper proteins such as YidC. It is only there that they achieve their final folded state. To date, it has been assumed that the insertion occurred exclusively via an opening in the translocon – the “lateral gate”. However, it has not been possible to confirm this using imaging methods. In the latest studies on eukaryotes (higher cells with a nucleus), an alternative path into the membrane has now been observed where membrane proteins are inserted via the back of the translocon (“back-of-Sec”).
In the study now published in The EMBO Journal, the team headed by Professor Kedrov examined the structure and insertion process of proteins in bacterial cells, so-called prokaryotes. “The recently published findings from eukaryotic systems have fundamentally changed our understanding of membrane protein insertion and challenged long-standing paradigms. This led us to ask the following key question: Is this newly described mechanism found exclusively in higher organisms or does it also exist in bacteria?
To answer this question, ribosome-membrane protein complexes were produced at HHU and their structure then determined at LMU Munich using cryogenic electron microscopy. The researchers in Düsseldorf subsequently decoded the functionality on the basis of these data.
Max Busch, doctoral researcher in the group headed by Professor Kedrov and lead author of the study: “For the first time, we have succeeded in showing the complete path from nascent membrane proteins in a ribosome through to their insertion in the membrane. We have also seen when the three-dimensional folded structures of the proteins are formed.”
The findings enable a better understanding of the folding processes of membrane proteins to be gained. “And we can learn something about the evolutionary development of these processes, which are important for the cells,” emphasises Kedrov, adding: “A similar process is also known to exist for other organisms such as yeasts. We can thus deduce when this process became established during the development of living organisms and was preserved over the course of history.”
A further objective of the group led by Professor Kedrov is to examine membrane protein insertion further and in greater detail, building on the findings obtained to date. One particular focus will be to clarify the role of other proteins involved.
Text: Dr. Arne Claussen
Picture:
Schematic diagram of the insertion of a membrane protein into a lipid bilayer cell membrane (structure with the light blue circles). On the left, the ribosome produces the new protein (red) and transfers it straight to the insertion machinery, which comprises a larger molecule complex. On the right, the new membrane protein can be seen in position inside the membrane.
Prof. Dr. Alexej Kedrov
Max Busch, Cristian Rosales-Hernandez, Michael Kamel, Yulia Schaumkessel, Eli O. van der Sluis, Otto Berninghausen, Thomas Becker, Roland Beckmann, Alexej Kedrov; Substrate-induced assembly and functional mechanism of the bacterial membrane protein insertase SecYEG-YidC; The EMBO Journal (2026)
DOI: 10.1038/s44318-026-00837-6
See the text for the full caption
Copyright: HHU / Alexej Kedrov
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See the text for the full caption
Copyright: HHU / Alexej Kedrov
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